PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68185.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 197aa    MW: 22452.5 Da    PI: 10.1787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68185.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.77.7e-56261561128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdeel+++yL+ k+++  +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++   
  MLOC_68185.1  26 LPPGFRFHPTDEELITYYLRGKIADAGFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFTGqp 121
                   79*************************999.89***************99999****************************************9888 PP

           NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +elvg+kktLvfykgrap+gek++Wvmheyrl
  MLOC_68185.1 122 psAQELVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 156
                   877888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-6022167IPR003441NAC domain
PROSITE profilePS5100554.81326174IPR003441NAC domain
PfamPF023652.4E-2927156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEGSGGGAEA ASKKKKSSKE GEEESLPPGF RFHPTDEELI TYYLRGKIAD AGFTARAITE  60
VDLNKCEPWD LPEKAKMGEK EWYFFSLRDR KYPTGVRTNR ATNAGYWKTT GKDKEIFTGQ  120
PPSAQELVGM KKTLVFYKGR APRGEKSNWV MHEYRLHLKP TSKSNKVLQN MSSFIYGFVH  180
QSFQKAGDHP PFRKKFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B6e-512516416149NAC domain-containing protein 19
4dul_A6e-512516416149NAC domain-containing protein 19
1ut7_B6e-512516416149NO APICAL MERISTEM PROTEIN
1ut7_A6e-512516416149NO APICAL MERISTEM PROTEIN
1ut4_B6e-512516416149NO APICAL MERISTEM PROTEIN
1ut4_A6e-512516416149NO APICAL MERISTEM PROTEIN
3swp_D6e-512516419152NAC domain-containing protein 19
3swp_C6e-512516419152NAC domain-containing protein 19
3swp_B6e-512516419152NAC domain-containing protein 19
3swp_A6e-512516419152NAC domain-containing protein 19
3swm_D6e-512516419152NAC domain-containing protein 19
3swm_C6e-512516419152NAC domain-containing protein 19
3swm_B6e-512516419152NAC domain-containing protein 19
3swm_A6e-512516419152NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238320.11e-97PREDICTED: NAC domain-containing protein 92-like
SwissprotO040172e-74NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLM0YDK71e-146M0YDK7_HORVD; Uncharacterized protein
STRINGMLOC_68185.21e-119(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.27e-79NAC domain containing protein 38